- •Process of metabolism within a cell 1 59
- •In cellular metabolism, energy-requiring reactions occur because they are coupled with reactions that cleave [kliːv] atp.
- •164 Chapter 6 cellular metabolism
- •Metabolic pathways 165
- •In the Krebs cycle, intermediary metabolites, such
- •In the Embden-Meyerhof pathway of glycolysis, glucose is partially broken down into pyruvate, two nadh molecules are formed, and the energy released leads to a net yield of two atp.
- •Intestinal Yeast Infections Cause Intoxication
- •174 Chapter 6 cellular metabolism
- •Production of Cheese
- •In photosynthesis, light energy is captured and used
- •Metabolic pathways 179
- •180 Chapter 6 cellular metabolism
- •182 Chapter 6 cellular metabolism
- •Explosions that Destroy Houses Traced to Methane from Landfill
- •188 Chapter 6 cellular metabolism
FIG.
6-22 The
Methyl Red test, which detects the production of acid, is
useful for differentiating various bacterial species, including
Enterobacter
aerogenes
and Escherichia
coli. Negative
test result for Enterobacter
aerogenes
is on left. Positive test result for Escherichia
coli
is on right.
reaction
of the pH indicator Methyl Red (FIG. 6-22). This test is one of
several typically used in clinical identification systems, including
miniaturized commercial identification systems used for the
identification of bacteria, such as E.
coli,
which cause urinary tract and other infections.
Butanediol
Fermentation
Some
bacteria, such as members of the bacterial genus Enterobacter
and Klebsiella,
carry out a butanediol
fermentation
pathway.
An intermediary product in the butanediol fermentation pathway
is acetoin (acetyl methyl carbinol). One of the classic diagnostic
tests used for separating E. coli
from Enterobacter
aerogenes
is the Voges-Proskauer
test, which
detects the presence of acetoin (FIG. 6-23). E. coli
does not carry out a butanediol pathway, whereas Enterobacter
aerogenes
does. Thus Enterobacter
aerogenes
is Voges-Proskauer positive and E. coli
is Voges- Proskauer negative.
It
is important to distinguish between these organisms because E.
coli
is used as an indicator of human fecal contamination in assessing
water quality and safety. The Methyl Red test is also used for
separating Enterobacter
aerogenes
from E.
coli. It
detects very low pH resulting from high amounts of acid production.
Because Enterobacter
aerogenes
channels part of its substrate into the neutral fermentation end
product, butanediol, it does not produce as much acid and thus does
not lower the pH as much as E.
coli,
which channels all of its substrate into the mixed-acid
fermentation pathway. Thus E. coli
shows a positive Methyl Red test, whereas Enterobacter
aerogenes
yields the opposite reaction.
FIG.
6-23 The
Voges-Proskauer test, which detects the production of acetoin, is
useful for differentiating various bacterial species, including
Enterobacter
aerogenes
and Escherichia
coli.
Negative test result for Escherichia
coli
is on left. Positive test result for Enterobacter
aerogenes
is on right.
Butanol
Fermentation
In
yet another pathway, members of the genus Clostridium
carry out a butanol
fermentation. Different
species of Clostridium
form various end products via this fermentation pathway, with
pyruvate being converted either to acetone and carbon dioxide,
propanol and carbon dioxide, butyrate, or butanol. Several of these
products are good solvents. Chaim Weizmann, a Polish-born
microbiologist working in Britain, discovered the butanol
fermentation pathway in time to allow the British to produce
acetone for the manufacture of munitions for World War I. Their
ability to do so was instrumental in the success of the Allied
forces. Today acetone for nail polish remover often is produced
by microbial fermentation via this pathway.
Photosynthetic
Metabolism
Some
early organisms evolved a different way of generating ATP by
photoautotrophic
metabolism, or
photosynthesis.
Instead
of obtaining energy for ATP synthesis by breaking chemical bonds,
these organisms, called photoautotrophs,
developed
the ability to use light as the source of energy that moves protons
across membranes of their cells to create a protonmotive force.
Photoautotrophs also obtain their carbon from inorganic C02.
to
generate ATP.
In
photosynthesis, sunlight strikes pigments embedded within the
membranes of the cell. In this first stage of photosynthesis,
electrons within special re-
In photosynthesis, light energy is captured and used
Metabolic pathways 179
action
centers of certain pigments are excited, meaning that they have
absorbed energy from the light. These excited electrons pass from
the reaction-center pigments through a series of proteins embedded
within the membrane, eventually reaching and activating
channels that enable the transport of protons across the membrane.
These channels retain the electrons and export the protons
across the membrane. The protonmotive force generated in this
process is used to produce ATP by chemiosmosis. As a result of
electron transport, the reduced coenzyme NADPH also is produced;
NADPH is later used to produce sugars from carbon dioxide.
Photoautotrophs
Organisms
that use light as a source of energy and carbon dioxide as their
chief source of carbon are called photoautotrophs.
The
photoautotrophs include photosynthetic bacteria (green sulfur
and purple sulfur bacteria, and cyanobacteria), algae, and
green plants (FIG. 6-24). In the photosynthetic reactions of
cyanobacteria, algae, and plants, the electrons of water are
used to reduce carbon dioxide, and oxygen gas (02) is
given off (FIG. 6-25). Because this photosynthetic process produces
02, it is sometimes
FIG.
6-24 Micrograph
of the cyanobacterium Aphani-
zomenon flos-aquae.
FIG.
6-25 The
Z
pathway
of oxidative photophosphorylation combines two separate
photoactivation steps (photosystems) into a unified pathway.
These are the excitation of P680 to Рш.
and the excitation of P700 to P700.. The P680
has a sufficiently positive reduction potential to use H20
as an electron donor. The resulting P680. is at a
considerably more negative reduction potential, such that the
resulting electrons can "fall down" a potential gradient
in which protons are extruded across the membrane and form a proton
gradient (protonmotive force) to generate ATP. The electrons
are passed to the P700 complex, which when excited
is at a potential more negative than that of the NADP+/NADPH
redox pair and is thereby capable of reducing NADP+ to
NADPH. The pathway is called the Z
pathway
because when these reactions are plotted as a function of
reduction potential the resulting figure resembles a Z. The
protons originate from the photolysis of water to establish the
protonmotive force.
180 Chapter 6 cellular metabolism
FIG.
6-26 Cyclic photophosphorylation of anaerobic photosynthetic
bacteria uses P870- This pathway generates
the proton gradient needed to drive the formation of ATP and does
not produce reduced coenzyme.
METABOLIC
PATHWAYS 181
called
oxygenic
photosynthesis. The
light-trapping pigment required by green plants, algae, and
cyanobacteria is the green compound chlorophyll
a.
It is
located in the thylakoids of chloroplasts in algae and green plants
and in the thylakoids that form a part of an elaborate internal
membrane structure in cyanobacteria.
Algae
and cyanobacteria have chlorophyll a, which absorbs light energy.
Oxygen
is formed from water during oxygenic photosynthesis.
Besides
the cyanobacteria, there are several other families of
photosynthetic prokaryotes that are classified according to the
way they reduce carbon dioxide. These bacteria cannot use
electrons from water to reduce carbon dioxide and cannot carry on
photosynthesis when oxygen is present, that is, they must have
an anaerobic environment (FIG. 6-26). Their photosynthetic process
does not produce oxygen gas, and therefore this type of
photosynthesis is called anoxygenic
photosynthesis.
The
green sulfur and purple sulfur bacteria are photoautotrophic
microorganisms that carry out anoxygenic photosynthesis. The
chlorophyll used by these photosynthetic bacteria is
bacteriochlorophyll,
which
absorbs light of longer wavelengths than that absorbed by
chlorophyll a.
The green sulfur bacteria use sulfur, sulfur compounds, or hydrogen
gas to reduce carbon dioxide and form organic compounds.
Applying the energy from light to bacteriochloro
phyll
and the appropriate enzymes, these bacteria oxidize sulfur to
sulfuric acid, hydrogen sulfide to sulfur, or hydrogen gas to water.
The purple sulfur bacteria also use sulfur, sulfur compounds, or
hydrogen gas to reduce carbon dioxide. They are distinguished
from the green sulfur bacteria on the basis of their biochemistry
and morphology.
Oxygen
is not produced during anoxygenic photosynthesis.
Anaerobic
photosynthetic sulfur bacteria oxidize hydrogen sulfide (H2S)
so that they can reduce carbon dioxide to organic matter.
Photoheterotrophs
Photoheterotrophs
use
light as a source of energy and can convert C02 to
sugars, but they also require organic compounds as sources of carbon
for growth. Their organic compound sources include alcohols, fatty
and other organic acids, and carbohydrates. Among the
photoheterotrophs are the green and purple nonsulfur bacteria.
Photosystems
and ATP Generation
Chlorophyll
and various other colored pigmented compounds are light-trapping
pigments that are organized into clusters of 200 to 300
molecules. These compounds harvest or collect light energy in one of
their chemical bonds. When this happens, an electron becomes excited
and reaches a higher energy level. That extra energy is released and
transferred to a
