- •Federal Agency of Education tambov state university named after g.R. Derzhavin
- •Biochemistry (part I)
- •Tambov 2012
- •I. Theoretical part The subject Of biological chemistry
- •1. Chemistry of proteins
- •1.1. Methods of exctraction and purification of proteins
- •1.2. Functions of proteins
- •1.3. Amino-acid composition of proteins
- •1.4. The structural organization of proteins
- •1.5. Physical and chemical properties of proteins
- •1.6. Classification of proteins
- •1.6.1. Simple proteins
- •1. Albumins and globulins.
- •2. Protamines and histones.
- •3. Prolamins and glutelins.
- •1.6.2. Conjugative proteins
- •1. Proteins containing non-heme iron.
- •Nucleic acids
- •The structure of nucleic acids
- •Test Questions
- •2. Enzymes
- •2.1. The chemical nature of enzymes
- •2.2. The mechanism of enzymes action
- •2.3. Kinetics of enzymatic reactions
- •2.4. Enzyme properties
- •2.5. Regulation of enzyme activity
- •1. Control of the enzyme amount.
- •2. Control of enzyme activity.
- •2.1. The influence of activators and inhibitors on the enzymes.
- •2.3. Chemical modification of the enzyme.
- •2.4. Allosteric regulation.
- •2.6. Classification and nomenclature of enzymes
- •2.7. Enzymes in medicine
- •Test Questions
- •3. Vitamins
- •3.1. Fat soluble vitamins
- •3.2. Water soluble vitamins
- •Vitamin-like substances
- •Test Questions
- •4. Basic principles of biomembranes’ organisation
- •4.1. Structure and functions of membranes
- •1. Phospholipids (90%) - glycerophospholipids and sphingophospholipids:
- •4.2. Transport of substances across membranes
- •2. Facilitated diffusion
- •Test Questions
- •5. Transmembrane transduction of the hormonal signal
- •Test Questions
- •6. Introduction to metabolism
- •6.1. Stages of catabolism
- •III. A common catabolic pathway.
- •6.2. Bioenergetics
- •6.3. Organization and operation of the respiratory chain
- •6.4. Uncoupling of oxidation from phosphorylation
- •6.5. Generation of free radicals in cells
- •6.6. Reactions of the common catabolic pathway
- •6.6.1. Oxidative decarboxylation of pyruvate
- •6.6.2. Citric acid cycle
- •7. Carbohydrate metabolism
- •7.1. Digestion of carbohydrates
- •7.2. Glycogen metabolism
- •7.3. Glycolysis
- •7.4. The inclusion of fructose and galactose
- •In glycolysis
- •7.5. The shuttle mechanisms
- •7.6. Cori cycle
- •7.7. Alcoholic fermentation
- •C6h12o6 → 2 ch3chohcooh
- •7.8. Pentose phosphate pathway (hexose monophosphate shunt)
- •7.9. Gluconeogenesis
- •Synthesis of glucose from the pyruvic acid.
- •Fructose bisphosphatase
- •Glucose-6-phosphatase
- •7.10. Regulation of carbohydrate metabolism
- •Glucose → glucose-6-phosphate.
- •Pyruvate → oxaloacetate → phosphoenolpyruvate
- •7.11. Violations of carbohydrate metabolism
- •Violation of hydrolysis and absorption of carbohydrates
- •Violations of the intermediate metabolism of carbohydrates
- •Quiz Questions
- •II. Laboratory practice Laboratory work 1. The analysis of amino acids and proteins
- •1. Qualitative analysis of amino acid mixtures by thing layer chromatography method.
- •2. Colour reaction of proteins.
- •2.1. Millon’s reaction.
- •2.2. Ninhydrin’s reaction.
- •3. Reactions of precipitation of proteins.
- •3.1. Precipitation of proteins with salts of heavy metals.
- •3.3. Precipitation of proteins with the help of concentrated mineral acids.
- •3.4. Precipitation of proteins by organic acids.
- •Test questions
- •Laboratory work 2. Conjugated proteins: glycoproteins and phosphoproteins
- •1. Phosphoproteins.
- •1.1. Proof of protein component’s present in the casein hydrolyzate.
- •1.2. Proof of phosphoric acid’s presence in the casein hydrolyzate.
- •1.3. Determination of the isoelectric point of casein.
- •1.2. Reaction with diphenylamine.
- •2. Chromoproteins.
- •2.1. Benzidine test for hemin group of hemoglobin.
- •2.4. Proof of carbohydrate’s presence in the egg albumin.
- •Test questions
- •Laboratory work 3. Conjugated proteins: nucleoproteins and chromoproteins
- •1. Nucleoproteins
- •1.1. Isolation of deoxyribonucleoproteins from the spleen.
- •Test questions
- •Laboratory work 4. Enzymes
- •1. Detection of peroxidase in potatoes.
- •2. Detection of pepsin in the gastric juice.
- •3. Hydrolysis of starch by α-amylase.
- •4. Specificity of amylase and sucrase enzymes action.
- •Test questions
- •Laboratory work 5. Identifying the activity of enzymes
- •1. The influence of activators and inhibitors upon activity of enzymes.
- •1. The influence of activators and inhibitors upon α-amylase.
- •1.2. Inhibitory effect of chloride ions on dehydrogenase complex of potatoes.
- •2. Identifying the activity of α-amylase according to Wolgemut.
- •Test questions
- •Inhibitor calimine
- •Laboratory work 6. Vitamins
- •Vitamin a (vitamin a, retinol)
- •Vitamin d (calciferol)
- •3.1. Reaction with concentrated nitric acid.
- •3.2. Reaction with ferric chloride (III).
- •9.2. Reaction with methylene-blue.
- •Test questions
- •Laboratory work 7. Oxidoreductases. Common catabolic pathway
- •1. Comparison of redox-potentials of riboflavin and methylene blue.
- •2. Identifying of catalase activity according to a.N. Bach and а.I. Oparin.
- •Test questions
- •Laboratory work 8. Carbohydrate metabolism
- •2.1. Trommer’s test with copper hydroxide.
- •2.2. Discovery of fructosuria by Selivanov’s test.
- •2.3. Enzymatic method of semi-quantitative identification of glucose in urine with the help of "GlucoPhan" test strip.
- •Test questions
- •References
Glucose → glucose-6-phosphate.
Insulin induces the synthesis of glucokinase and thus accelerates the phosphorylation of glucose.
Fructose-2,6-bisphosphate allosterically activates phosphofructokinase (glycolysis is increased) and inhibits the phosphatase fructose-1,6-bisphosphatase (gluconeogenesis is slowed down).
Fructose-2,6-bisphosphate is formed by phosphorylation of fructose-6-phosphate with the participation of the bifunctional enzyme. It has two domains with different enzymatic activity.
When it is in dephosphorylated form, it has kinase activity which is characteristic of the absorptive period (insulin-glucagon index is high). Glycolysis is increased.
In phosphorylated form it has phosphatase activity (prolonged starvation, insulin / glucagon index is low). The amount of fructose-2,6-bisphosphate is reduced, glycolysis is slowed down and switched on gluconeogenesis.
During digestion insulin activates protein phosphatase, which dephosphorylates pyruvate kinase, and converts it into active state. The conversion of phosphoenolpyruvate to pyruvate (glycolytic reaction) is accelerated during digestion and slowed down into postabsorbtiv period.
The reactions of gluconeogenesis:
Pyruvate → oxaloacetate → phosphoenolpyruvate
can occur at any state of the organism.
During the digestion because of the acceleration of the initial stages of glycolysis the content of fructose-1,6-bisphosphate is increased, leading to activation of pyruvate kinase (glycolysis is increased).
After a meal rich in carbohydrates, insulin-glucagon index is increased, amount of glucokinase phosphofructokinase, pyruvate kinase (glycolytic enzymes) is increased. It stimulates the glycolytic pathway.
Glucose in liver cells is also used to energy supply of hepatocytes. The main consumers of ATP in the hepatocytes are the transmembrane transport of metabolites, synthesis of proteins, glycogen, fat, and gluconeogenesis.
ATP and AMP are allosteric effectors of some glycolytic enzymes: AMP activates phosphofructokinase and inhibits fructose-1,6-bisphosphatase, ATP inhibits pyruvate kinase. Thus, with the expenditure of ATP concentration of AMP is increased, glycolysis and ATP synthesis are activated, and gluconeogenesis is slowed down.
7.11. Violations of carbohydrate metabolism
Violation of hydrolysis and absorption of carbohydrates
Absorption of carbohydrates is violated at failure of amylolytic enzymes of the gastrointestinal tract (pancreatic juice amylase, etc.). In this situation carbohydrates that come from food are not broken down to monosaccharides and are not absorbed. Carbohydrate starvation is developed. Absorption of carbohydrates is violated in inflammation of the intestinal wall, resulting in impaired glucose phosphorylation. This happens in cases of poisoning of toxins that block the enzyme hexokinase.
Glycogenosis
Glycogenosis is a group of inherited diseases caused by deficiency of enzymes involved in synthesis or breakdown of glycogen.
Glycogenosis of 0 type occurs under glycogen synthase deficiency. It is characterized by a sharp decrease of glycogen in the liver, there is a condition until the development of coma (hypoglycemic syndrome). Patients with glycogen synthase deficiency die at an early age.
Lack of enzymes involved in the breakdown of glycogenleads to its accumulation in organs and tissues (Table 1).
Table 1. The diseases associated with metabolic disorders of glycogen.
Name of disease |
Causes |
Symptoms |
Gierke's disease, glycogen storage disease type I |
Hereditary defects of synthesis of glucose-6-phosphatase in liver and kidney |
Enlargement of liver (hepatomegaly), kidney, increase in the concentration of pyruvate and lactate in blood, acidosis, hypoglycemia, convulsions, growth retardation |
Pompe disease, glycogen storage disease type II |
Lack of enzyme -1,4-glucosidase |
Abnormal accumulation of glycogene in the cells. Muscle weakness. Enlargement of heart, liver, kidney, spleen |
Corey's disease, glycogenosis type III |
Decreased activity of amilo-(1-6)-glycosidase and (or) glycogen branching enzyme |
Residual time-branching dextrin is accumulated. Growth retardation, liver enlargement, muscular weakness, as a result of the accumulation of residual dextrin in muscles |
Andersen's disease, glycogenosis type IV |
Violation of glycogen branching enzyme activity, resulting in storage of abnormal glycogen |
Enlarged liver, jaundice, cirrhosis, hypoglycemia |
McArdle's disease, glycogenosis type V |
Lack of muscle phosphorylase |
Skeletal muscles are increased in volume and become very dense. Muscle weakness, muscle cramps, tachycardia at doing exercises |
Hers' disease, glycogenosis type VI |
Lack of hepatic enzyme phosphorylase |
Enlargement of the liver, growth retardation, hyperlipemia, hyperglycemia |
