- •Federal Agency of Education tambov state university named after g.R. Derzhavin
- •Biochemistry (part I)
- •Tambov 2012
- •I. Theoretical part The subject Of biological chemistry
- •1. Chemistry of proteins
- •1.1. Methods of exctraction and purification of proteins
- •1.2. Functions of proteins
- •1.3. Amino-acid composition of proteins
- •1.4. The structural organization of proteins
- •1.5. Physical and chemical properties of proteins
- •1.6. Classification of proteins
- •1.6.1. Simple proteins
- •1. Albumins and globulins.
- •2. Protamines and histones.
- •3. Prolamins and glutelins.
- •1.6.2. Conjugative proteins
- •1. Proteins containing non-heme iron.
- •Nucleic acids
- •The structure of nucleic acids
- •Test Questions
- •2. Enzymes
- •2.1. The chemical nature of enzymes
- •2.2. The mechanism of enzymes action
- •2.3. Kinetics of enzymatic reactions
- •2.4. Enzyme properties
- •2.5. Regulation of enzyme activity
- •1. Control of the enzyme amount.
- •2. Control of enzyme activity.
- •2.1. The influence of activators and inhibitors on the enzymes.
- •2.3. Chemical modification of the enzyme.
- •2.4. Allosteric regulation.
- •2.6. Classification and nomenclature of enzymes
- •2.7. Enzymes in medicine
- •Test Questions
- •3. Vitamins
- •3.1. Fat soluble vitamins
- •3.2. Water soluble vitamins
- •Vitamin-like substances
- •Test Questions
- •4. Basic principles of biomembranes’ organisation
- •4.1. Structure and functions of membranes
- •1. Phospholipids (90%) - glycerophospholipids and sphingophospholipids:
- •4.2. Transport of substances across membranes
- •2. Facilitated diffusion
- •Test Questions
- •5. Transmembrane transduction of the hormonal signal
- •Test Questions
- •6. Introduction to metabolism
- •6.1. Stages of catabolism
- •III. A common catabolic pathway.
- •6.2. Bioenergetics
- •6.3. Organization and operation of the respiratory chain
- •6.4. Uncoupling of oxidation from phosphorylation
- •6.5. Generation of free radicals in cells
- •6.6. Reactions of the common catabolic pathway
- •6.6.1. Oxidative decarboxylation of pyruvate
- •6.6.2. Citric acid cycle
- •7. Carbohydrate metabolism
- •7.1. Digestion of carbohydrates
- •7.2. Glycogen metabolism
- •7.3. Glycolysis
- •7.4. The inclusion of fructose and galactose
- •In glycolysis
- •7.5. The shuttle mechanisms
- •7.6. Cori cycle
- •7.7. Alcoholic fermentation
- •C6h12o6 → 2 ch3chohcooh
- •7.8. Pentose phosphate pathway (hexose monophosphate shunt)
- •7.9. Gluconeogenesis
- •Synthesis of glucose from the pyruvic acid.
- •Fructose bisphosphatase
- •Glucose-6-phosphatase
- •7.10. Regulation of carbohydrate metabolism
- •Glucose → glucose-6-phosphate.
- •Pyruvate → oxaloacetate → phosphoenolpyruvate
- •7.11. Violations of carbohydrate metabolism
- •Violation of hydrolysis and absorption of carbohydrates
- •Violations of the intermediate metabolism of carbohydrates
- •Quiz Questions
- •II. Laboratory practice Laboratory work 1. The analysis of amino acids and proteins
- •1. Qualitative analysis of amino acid mixtures by thing layer chromatography method.
- •2. Colour reaction of proteins.
- •2.1. Millon’s reaction.
- •2.2. Ninhydrin’s reaction.
- •3. Reactions of precipitation of proteins.
- •3.1. Precipitation of proteins with salts of heavy metals.
- •3.3. Precipitation of proteins with the help of concentrated mineral acids.
- •3.4. Precipitation of proteins by organic acids.
- •Test questions
- •Laboratory work 2. Conjugated proteins: glycoproteins and phosphoproteins
- •1. Phosphoproteins.
- •1.1. Proof of protein component’s present in the casein hydrolyzate.
- •1.2. Proof of phosphoric acid’s presence in the casein hydrolyzate.
- •1.3. Determination of the isoelectric point of casein.
- •1.2. Reaction with diphenylamine.
- •2. Chromoproteins.
- •2.1. Benzidine test for hemin group of hemoglobin.
- •2.4. Proof of carbohydrate’s presence in the egg albumin.
- •Test questions
- •Laboratory work 3. Conjugated proteins: nucleoproteins and chromoproteins
- •1. Nucleoproteins
- •1.1. Isolation of deoxyribonucleoproteins from the spleen.
- •Test questions
- •Laboratory work 4. Enzymes
- •1. Detection of peroxidase in potatoes.
- •2. Detection of pepsin in the gastric juice.
- •3. Hydrolysis of starch by α-amylase.
- •4. Specificity of amylase and sucrase enzymes action.
- •Test questions
- •Laboratory work 5. Identifying the activity of enzymes
- •1. The influence of activators and inhibitors upon activity of enzymes.
- •1. The influence of activators and inhibitors upon α-amylase.
- •1.2. Inhibitory effect of chloride ions on dehydrogenase complex of potatoes.
- •2. Identifying the activity of α-amylase according to Wolgemut.
- •Test questions
- •Inhibitor calimine
- •Laboratory work 6. Vitamins
- •Vitamin a (vitamin a, retinol)
- •Vitamin d (calciferol)
- •3.1. Reaction with concentrated nitric acid.
- •3.2. Reaction with ferric chloride (III).
- •9.2. Reaction with methylene-blue.
- •Test questions
- •Laboratory work 7. Oxidoreductases. Common catabolic pathway
- •1. Comparison of redox-potentials of riboflavin and methylene blue.
- •2. Identifying of catalase activity according to a.N. Bach and а.I. Oparin.
- •Test questions
- •Laboratory work 8. Carbohydrate metabolism
- •2.1. Trommer’s test with copper hydroxide.
- •2.2. Discovery of fructosuria by Selivanov’s test.
- •2.3. Enzymatic method of semi-quantitative identification of glucose in urine with the help of "GlucoPhan" test strip.
- •Test questions
- •References
3.2. Reaction with ferric chloride (III).
Take 4-5 drops of 0,1% α-tocopherol spirit solution, place it into a dry test tube, add 0,5 ml of ferric chloride (III) and mix properly. The solution is turning red when heated as a result of tocopherol oxidation by ferric chloride (III).
Experiment 4. Qualitative reaction to vitamin K (vicasol).
Add 5 drops of aniline to 0,5 ml of 0,2% vicasol solution in ethanol and mix. The mixture will get red coloring.
Experiment 5. Reaction of vitamin В1 (thiamine) oxidation into thiochrome.
Pour 5-6 drops of 5% К3[Fe(CN)6] solution and 1 ml of 30% sodium hydroxide to 0,5 ml of thiamine solution and mix. Then add 1 ml of isobutyl alcohol and shake intensively during 1-2 minutes. You can observe blue fluorescence in UV rays in the upper spirit layer. Heat the mixture in the test tube in a water bath, stirring. You will observe yellow coloring appearance. The fluorescence and the yellow coloring are caused by thiochrome formation:
Thiamine chloride
Thiochrome
Experiment 6. Qualitative reaction to vitamin В2 (riboflavin).
Pour 10 drops of concentrated hydrochloric acid and add a piece of zinc metal to 0,5ml of riboflavin solution. Hydrogen bubbling is beginning and the liquid is gradually getting pink and then it is decolorizing. The reaction is caused by riboflavin reduction first into rhodoflavin of red coloring and then into colorless leucoflavin. When the bleached solution is shaken, the leuco compound is again oxidized by aerial oxygen into riboflavin:
Riboflavin Leucoflavin
Experiment 7. Reaction of vitamin В6 (pyridoxine) with iron chloride (III).
Pyridoxine is a general definition for a group of chemical compounds that possess the activity of vitamin В6:
Pyridoxol (pyridoxine) pyridoxal pyridoxamine
Pour 5-10 drops of 5% vitamin В6 water solution into a test tube, add 1-2 drops of 5% iron chloride solution. After shaking the mixture there will be a red-colored liquid. A complex compound of iron phenolate type is formed.
Experiment 8. Qualitative reaction to vitamin РР (nicotinamide, nicotinic acid).
Dissolve 5-10 mg of nicotinic acid in 10-20 drops of 10% acetic acid solution and heat. Add the equal volume of 5% copper acetate solution to the solution heated up to boiling. The liquid becomes blue, and when left to stand undisturbed, the blue colored sediment of copper salt of nicotinic acid settles down.
Experiment 9. Qualitative reaction to vitamin С (ascorbic acid).
9.1. Interaction of vitamin С with К3[Fe(CN)6]. Add some drops of 5% potassium hydroxide solution and 10% К3[Fe(CN)6] solution to 5 ml of 0,02% vitamin C solution and mix, then add 2-3 drops of 10% hydrochloric acid solution and 1-2 drops of 10% iron chloride (III) solution. You will see blue-green coloring and gradually settling down blue sediment of Berlin blue (ferric ferrocyanide) - Fe4[Fe(CN)6]3.
L- ascorbic acid L- dehydroascorbic acid
3K4[Fe(CN)6] + 4FeCl3 → Fe4[Fe(CN)6]3 ↓ + 12KCl
