- •Introduction into biochemistry
- •General properties
- •Classification of proteins
- •Simple Proteins – representatives, properties and role
- •Globulins [g]
- •Histones (h) h are basic non value proteins. Localized in nucleus with mol. Mass (mm) 10000-20000 d. They contain of 30% diaminomonocarboxylic acids and have positive charge. Their iep is equal 10.
- •Table 1 “The properties of globular simple proteins”
- •Conjugated proteins
- •Table 2 Composition of the free (transport) lipoproteins in plasma of human
- •True gp Proteoglycans
- •Table 3 Chemical nature of glycosaminoglycans
- •Nucleoproteins (np)
- •Mononucleotides
- •Table 4 The composition and names of nucleosides, nucleotides and their phosphoric derivatives
- •Structure of dna Primary st. Of dna is a spirally one polynucleotides chain (pnc), the disposition of nucleotides in which determine all hereditary properties of organism.
- •Structure of rna
- •Enzymes
- •Mechanism of enzyme action
- •Factors influencing on enzyme activity
- •Enzyme inhibition
- •Classification of enzymes
- •III. Hydrolases
- •Bioenergetics
- •Table 6 Redox potential (rp)
- •Inhibition of oxidative phosphorylation.
- •The types of oxidation
- •Peroxidase’s type
- •Vitamins
- •Vitamin b12
- •Ascorbic acid (vitamin c)
- •Rutin, vitamin p (permeability) – bioflavonoids, capillaris’s strengthening
- •Fat soluble vitamins
- •Deficiency diseases
- •Vitamin k
- •Carbohydrates metabolism. Digestion and absorption of carbohydrates. Intermediate metabolism of carbohydrates
- •Carbohydrates metabolism. Intermediate and final stages of carbohydrates metabolism
- •Lipids of food, their importance, digestion, absorption. Micelles and chylomicrons. The role of intestinal wall, liver, lungs and adipose tissue in lipid metabolism
- •Lipids metabolism. Lipoproteins, their composition and role. The pathways of usage of glycerol and free fatty acids in cells
- •“Pathologic chemistry of lipid’s metabolism”
- •The intermediate Metabolism of Simple Proteins (part 1): the conversion of amino acids in tissues. The formation and usage of Creatine. The decarboxylation of amino acids, the role of biogenic amines
- •Simple proteins metabolism. The pathways of formation and detoxification of ammonia
- •Conjugated proteins metabolism
- •Biochemistry of liver
- •Classification of hormones
- •General properties of hormones
- •Hormones of epiphysis Melatonin
- •Hypothalamic hormones
- •Vasopressin (antidiuretic hormone)
- •Oxytocin
- •Hormones of hypophysis
- •Hormones of pancreas
- •Hormones of adrenal glands
- •Sexual hormones are formed in gonads.
- •Estrogens
- •If the pregnancy beginns so development of embryo occurs; if the pregnancy doesn’t occur so degeneration of yellow body proceeds and mensis beginns again Androgens
- •Biochemistry of blood plasma
- •Table 10 a main biochemical indices in the blood plasma (serum)
- •Functions and diagnostic importance of some fractions of proteins Table 11 Biologic and clinic importance of blood serum proteins
- •Blood clotting system
- •Blood dissolution system
- •Complement system
- •Inorganic constituents of blood plasma. Water-mineral metabolism. Acidosis and alkalosis
- •Acidosis and alkalosis Table 12 Acidosis and alkalosis
- •Water metabolism
- •Biochemistry of erythrocytes
- •Metabolism in erythrocytes
- •The physiological and pathological derivatives of hemoglobin and their spectra of taking up
- •Biochemistry of white blood cells
- •Biochemistry of kidneys
- •Normal and pathologic constituents of urine. Urine analysis – its clinical significance Composition of normal urine
- •Physical examination
- •I. Volume
- •The term polyuria implies an increased volume of urine
- •II. Colour
- •III. Specific Gravity
- •Clinical significance
- •IV. Acidity and pH
- •Clinical Significance
- •V. Odor
- •Causes of abnormal odor
- •VI. Turbidity
- •Types of turbidities
- •Inorganic constituents
- •Chlorides
- •Clinical significance
- •Organic constituents
- •Clinical significance
- •II. Ammonia
- •Clinical significance
- •Increase
- •Uric acid
- •Clinical significance
- •Clinical aspect
- •Creatinine and creatine
- •Oxalic Acid
- •Clinical significance
- •Aminoacids
- •Aminoacidurias
- •Proteins
- •Proteinuria
- •Abnormal constituents
Carbohydrates metabolism. Intermediate and final stages of carbohydrates metabolism
Gluconeogenesis and Cori cycle
Gluconeogenesis is a process of formation of glucose from intermediates. This process occurs mainly in liver and kidneys and it is considered as opposite directed reactions of anaerobic glycolysis, because reactions of anaerobic glycolysis are reversible. Only 3 reactions of anaerobic glycolysis are irreversible. These are reactions catalyzed by hexokinase, phosphofructokinase and pyruvatekinase. Another enzymes of gluconeogenesis catalyze these reactions. Hence, there are 3 round-way reactions of gluconeogenesis. These include formation of phosphoenolpyruvate; fructoso-6-phosphate from fructoso-1,6-diphosphate and glucose from glucose-6-phosphate.
1-st specific reaction of gluconeogenesis (1-st round way): formation of phosphoenolpyruvate.
2-nd reaction: fructoso-1,6-diphosphate is dephosphorylated and forms fructoso-6-phosphate.
Fructoso-6-phosphate is converted to glucoso-6-phosphate
3-rd reaction: glucoso-6-phosphate is dephosphorylated and glucose is formed
The importance of gluconeogenesis:
formation of glucose when deficiency of its is observed, e.g. in starvation
maintenance of homeostasis: pyruvate, lactate, glycogenic amino acids are converted to glucose. In some diseases of liver and kidneys gluconeogenesis is destroyed and lactate is increased in blood. It results in acidosis
Cori cycle and its role
Glycogenolysis, glycolysis and gluconeogenesis comprise intercommunicated system for maintenance of homeostasis and form Cori cycle:
Table 8. Cori cycle
Liver |
Blood |
Muscles |
Gl-6-phglucose
Gluconeogenesis
2 Lactate |
Glucose 3.4-6.1mM/l
<--2 Lactate |
Gl-6-ph (2847 kJ)
Glycolysis2 ATP (210kJ)
<--2 Lactate (2637 kJ)
|
The importance of Cori cycle consists in conservation of energy-riched lactate. Lactate isn’t lost, but it is converted to glucose.
Aerobic oxidation of glucose and its energetic value
The oxidation of glucose in aerobic conditions may order in 5 stages:
oxidation of glucose to pyruvate
oxidative decarboxylation of pyruvate to acetylCoA
usage of acetylCoA in citric acid cycle to NADH2, FPH2 and ATP
biologic oxidation, where energy and endogenic water are formed
oxidative phosphorylation in which ATP is formed
Thus, glucose is oxidized to pyruvate in anaerobic conditions. Pyruvate may be used in carboxylation and transamination.
Energetic value of aerobic glycolysis
4-2 = 2 ATP
Cytosolic NADH2 are oxidized through glycerophosphate’s and malate’s shunts.
Glycerophosphate’s shunt
2DOAP+2NADH22phosphoglycerate+2NAD (in cytosol)
2phosphoglycerate+2FAD2DOAP +2FADH2 (in mitochondrions), each FADH gives 2x2=4ATP
Malate’s shunt
2oxaloacetic acid+2NADH22malate+2NAD (in cytososl)
2malate+2NAD2oxaloacetic acid +2NADH2 (in mitochondrions), each NADH2 gives 2x3=6 ATP
Thus, energetic value of aerbic oxidation of glucose makes up 36 ATP (in the case of glycerophosphate’s shunt) or 38 ATP in the case of malate’s shunt.
Pentose phosphate’s cycle
This process occurs in cytosol with participation of many enzymes in anaerobic conditions. A main enzyme is glucose-6-phosphate dehydrogenase (with coenzyme NADPH2):
1) 6glucose-6-phosphate+12NADPH212NADP+6Pentose-5-phosphate+6CO2 (glucose-6-phosphate-dehydrogenase)
2) 6Pentose-5-phosphate4frucose-6-phosphate+2PGA
3) 2PGAfructose-6-phosphate
4) 4frucose-6-phosphate+ fructose-6-phosphate5 fructose-6-phosphate
5) 5 fructose-6-phosphate5glucose-6-phosphate
The importance of PPC:
This is a source of NADPH2 for biosynthesis of FFA, cholesterol, ketone bodies, NO etc; hydroxylation reactions; reductive amination, reduction of glutathione and action of NADH-oxidase of blood cells
This is a source of pentoses which are used on formation of nucleic acids, coenzymes, nucleoside tri- and diphosphates, GAG
This is a way of conversion of pentoses excess to glucose
The resemblance and differences between glycolysis and pentose’s cycle
Both processes occur in cytosol in anaerobic conditions and beginn from phosphorylation of glucose; some intermediates are the same, e.g. fructose-6-phosphate and phosphoglyceraldehyde.
Differences:
Glycolysis:
ATP is formed. ATP is a universal source of energy for many processes including proteins biosynthesis etc
Glucose is broken up to phosphotrioses. Full cleavage demands oxygen and occurs in mitochondrias;
Intermediates of glycolysis may be used for lipids and glucose formation;
Glycolysis occurs mainly in muscles
PPC:
NADPH2 are formed. They’re sources of energy for biosynthesis of FFA, cholesterol, ketone bodies and corticoids
Glucose is completely broken up in anaerobic conditions
Intermediates are used for nucleic acids, coenzymes, nucleoside tri- and diphosphates, GAG
It occurs in erythrocytes and leukocytes, adipose and nervous tissues, mammary and thyroid glands, liver
Elimination of final products of carbohydrates metabolism
Final products of carbohydrates metabolism are water and CO2. CO2 may be used in carboxylation, e.g. in formation of malonylCoA (2-nd stage of synthesis of FFA).
CO2 is mainly eliminated through lungs. Water is formed in BO and it is used in hydrolysis and hydration. Water is eliminated through kidneys, large intestine, skin and lungs.
