- •Биологическая химия
- •060101 – Лечебное дело
- •Часть II
- •Contents
- •Cholesterol
- •I. Theoretical part
- •1. Lipids metabolism
- •1.1. Classification of lipids
- •2. Glycolipids (basically glycosphingolipids).
- •Galactosyl ceramide
- •1.2. Digestion and absorption of fats
- •Lipolysis of triglycerides in adipose tissue
- •1.3. Fatty acids oxidation
- •2. Transport of fa inside mitochondrion.
- •3 Ketocyl CoA tyolase Palmitic acid preformed rest Palmityl-CoA Acetyl-CoA
- •Oxidation of unsaturated fatty acids
- •Violations of fatty acids oxidation
- •Acetyl-CoA metabolism
- •1.4. Lipogenesis
- •Regulation of fatty acids synthesis and break down
- •1.5. Metabolism of phospholipids
- •1.6. Essencial fatty acids. Eicosanoids
- •1.7. Cholesterol metabolism
- •Distribution and functions of cholesterol
- •Cholesterol biosynthesis
- •1. Conversion of active acetate into mevalonic acid.
- •2. Squalene formation from mevalonic acid.
- •Regulation of cholesterol synthesis
- •Cholesterol esters metabolism
- •Synthesis of bile acids
- •1.8. Regulation of lipid metabolism
- •1.9. Violations of lipid metabolism
- •Violation of fats adsorption processes:
- •Test questions
- •2. Proteins metabolism
- •2.1. Pathways of proteins degradation
- •2. Digestion of proteins.
- •The selectivity of peptidases
- •2.2. Amino acids metabolism
- •The reactions of amino groups
- •Intramolecular deamination.
- •Reactions of the carboxyl group
- •2. Aminoacyladenylate formation.
- •2.3. Ammonia neutralization in the body
- •Storage and transport of ammonia
- •Fumarate pyruvate aspartate
- •2.4. Violations of nitrogen metabolism
- •2.5. Metabolism of individual amino acids
- •2. Metabolism of sulfur amino acids.
- •3. Metabolism of branched chain amino acids.
- •Leu, Ile, Val α-keto acids acyl-CoA derivatives
- •4. Metabolism of dicarboxylic amino acids
- •5. Metabolism of diaminomonocarboxylic acids.
- •6. Metabolism of phenylalanine and tyrosine.
- •7. Metabolism of tryptophan.
- •2.6. Metabolism of conjugated proteins. Chromoproteins metabolism
- •The degradation of hemoglobin in the tissues (the formation of bile pigments)
- •The hemoglobin biosynthesis
- •2.7. Nucleoproteins metabolism
- •Adenine hypoxanthine; guanine xanthine
- •The synthesis of pyrimidine nucleotides u, c, t
- •I nosine-5'-phosphate Xantosine-5'-phosphate
- •The synthesis of deoxyribonucleotides
- •Test questions
- •3. Template biosynthesis
- •3.1. Biosynthesis of nucleic acids
- •3.1.1. Dna biosynthesis (replication)
- •Synthesis of dna in the rna template
- •3.1.2. Rna biosynthesis
- •Rna synthesis in rna template
- •3.2. Protein biosynthesis
- •The properties of the genetic code
- •Preparatory stage of protein synthesis
- •3.2.1. Translation
- •1. Initiation.
- •2. Elongation.
- •3.2.2. Post-translational modification of proteins
- •Transport of synthesized proteins through membranes
- •3.2.3. Regulation of protein biosynthesis
- •3.3. Genetic engineering
- •Test questions
- •4. Hormones, nomenclature, classification
- •Test questions
- •5. Metabolic processes interaction
- •In the organism
- •Protein and carbohydrate metabolisms interconnection
- •Protein and lipid metabolisms interconnection
- •Carbohydrate and lipid metabolisms interconnection
- •Levels of homeostasis regulation
- •Changes in metabolism during starvation
- •Test questions
- •6. Mineral and water and salt metabolism
- •6.1. Water in the human body
- •6.2. Salt metabolism
- •7. Renal biochemistry. The role of the kidneys in the regulation of water and salt metabolism
- •7.1. Excretory function of the kidneys
- •7.2. Homeostatic function of the kidneys
- •7.3. Metabolic functions of the kidneys
- •7.4. Regulation of water and salt metabolism and uropoiesis
- •Test Questions
- •8. Biochemistry of nervous tissue
- •8.1. Features of metabolism of nervous tissue
- •8.2. Mechanism of nerve impulses conduction
- •Cholinergic synapses
- •Test Questions
- •9. Biochemistry of muscle tissue
- •9.1. Chemical composition of muscle tissue
- •Sources of energy for muscle work
- •9.2. Mechanism of muscle contraction and its regulation
- •9.3. Biochemical changes in muscles within pathology
- •Test Questions
- •10. Biochemistry of extracellular matrix
- •10.1. Structure of extracellular matrix
- •Collagens.
- •Fibril-forming collagens
- •Collagen, forming a tela
- •10.2. Features of metabolism of extracellular matrix Catabolism of extracellular matrix proteins
- •Reparation of damage of the extracellular matrix in norm
- •Biochemical changes of connective tissue with aging
- •The lesions of connective tissue
- •11. Blood biochemistry
- •11.1. Respiratory function of blood. Buffer systems of blood
- •11.2. Blood coagulation system. Changes in pathology
- •Extrinsic and intrinsic pathways of blood clotting
- •Test Questions
- •12. Liver biochemistry
- •12.1. Main functions of the liver
- •The role of the liver in the metabolism of carbohydrates
- •The role of liver in lipid metabolism
- •The role of the liver in the metabolism of proteins and amino acids
- •12.2. Choleresis. Pigment metabolism. Types of jaundice
- •The cleavage of hemoglobin: hemoglobinverdoglobinbiliverdinbilirubin.
- •12.3. Detoxifying liver function
- •Test Questions
- •13. Regulation of calcium and phosphorus metabolism
- •14. Bone biochemistry
- •Test Questions
- •II. Laboratory workshop Laboratory work 1. Lipid metabolism
- •Hydrolysis of milk fat by lipase
- •Test Questions
- •Laboratory work 2. Phospholipids. Cholesterol
- •4.1. Schiff reaction.
- •4.2. Salkowski reaction.
- •4.3. Lieberman-Burchard reaction.
- •Preparation of solutions of cholesterol for the calibration curve
- •Test Questions
- •Laboratory work 3. Digestion of proteins. Determination of acids of gastric contents
- •Experiment 2. Qualitative determination of free hydrochloric acid in gastric juice using indicator congo red.
- •Results of the determination of gastric acidity
- •Test Questions
- •Laboratory work 4. The end products of nitrogen metabolism
- •Test Questions
- •Laboratory work 5. Hormones
- •2.1. Biuretic reaction.
- •2.2. Millon’s reaction.
- •2.4. Geller’s test.
- •3. Qualitative reaction to thyroxine.
- •4. Qualitative reactions to the 11-dehydro-17-oxykortikosteron (cortisone).
- •4.1. The reaction with phenylhydrazine sulfate.
- •4.2. The reaction with Fehling's reagent.
- •Test Questions
- •Laboratory work 6. Mineral and water and salt metabolism
- •1.1. Determination the pH of saliva.
- •1.2. Detection of phosphates in saliva.
- •2.1. Qualitative detection of chlorides in the urine.
- •2.2. Detection of calcium in the urine.
- •2.3. Detection of phosphates in the urine.
- •The composition of mixtures for the calibration curve
- •Test Questions
- •Laboratory work 7. Urine biochemistry
- •3.1. Qualitative detection and quantitative determination of protein in the urine.
- •3.1.1. The test by boiling in weak acid environment.
- •3.1.2. The test by boiling in an acid medium in the presence of saturated sodium chloride solution.
- •3.1.3. Geller’s test.
- •3.1.4. The test with sulfosalicylic acid.
- •3.1.5. Quantitative determination of protein in the urine by the method of dilution (Brandberg - Roberts - Stolnikov method).
- •Determination of protein in the urine using dilution method
- •3.2. Semi-quantitative method for determining glucose and ketone bodies in urine using test strips.
- •3.3. Detection of blood pigments in the urine by boiling with alkali (Geller’s test).
- •Test Questions
- •Laboratory 8. Blood biochemistry
- •1. Buffer properties of blood serum.
- •2. Quantitative determination of total protein in serum according to biuretic reaction.
- •The composition of mixtures for the ployying of the calibration curve
- •3. Determination of calcium in serum by the method of de Waard.
- •Test Questions
- •Laboratory work 9. Detection of bile pigments in urine
- •Test Questions
- •Laboratory work 10. Biochemistry of bone and connective tissue
- •1. Preparation of extracts of bone and teeth tissues.
- •Test Questions
- •Bibliography
- •Biochemistry
- •In Two Parts Part II
- •392008, Г. Тамбов, ул. Советская, 190г
Collagens.
The family of collagens includes about 20 proteins. Collagen is produced mainly by fibroblasts. It is about 30% of the total amount of protein of an adult, or 6% of body weight. A characteristic component of connective tissue structure is collagen fibers. They consist of elongated protein molecules of tropocollagen. This is the basic structural unit of collagen.
Fibril-forming collagens
Molecules of collagens I, II, III, V, XI are formed by three polypeptide chains, each of which is curled in left-handed helix, as they are twisted together in the right-hand super helix. Collagen is characterized by specific amino acid composition. 1/3 of all amino acid residues is glycine, 1/3 is proline and 4-hydroxyproline, about 1% is hydroxylysine; some forms of collagen contain 3-hydroxyproline.
Structural residue Gly-X-Y, often repeated in the primary structure of polypeptide chains of collagen, is called the collagen motive. Glycine is required, because any other amino acid radical cannot fit between the polypeptide chains in the center of the triple helix. X is often proline (or lysine), and Y is hydroxyproline (or another amino acid). They limit the rotation of the polypeptide chain. Triple helix is stabilized by hydrogen bonds with residues of hydroxyproline and water molecules (interfibrillar structural water) and interchain cross-links between lysine and hydroxylysine residues.
Collagen, forming a tela
Type IV collagen is the main structural protein of basement membranes. Its peptide chains remain globular end domains and form a reticular three-dimensional structure.
Collagen synthesis occurs on polyribosomes of ER. With the participation of prolylhydroxylase or lysylhydroxylase enzymes proline and lysine residues in the growing chains are hydroxylated with the participation of oxygen, -ketoglutarate and Fe2 + ion and ascorbic acid as cofactors. Hydroxylation is necessary for the formation of bonds between the molecules of collagen fibrils assembly.
During the synthesis peptide chains with the help of signal peptide penetrate through the membrane into the cavity of the ER, there they are glycosylated by attaching monosaccharide residues to certain residues of hydroxylysine and then combine to form molecules of procollagen. It moved to the Golgi complex, is included in the secretory granules and is secreted. In the intercellular space terminal propeptides are cleaved from procollagen by the influence of amino- and carboxypeptidases, and tropocollagen is formed.
Collagen fibrils formation occurs by self-assembly. There is a deamination of lysine and hydroxylysine to form an aldehyde group. They interact with the amino group of lysine residue of another molecule of collagen. Intermolecular covalent cross-linkers are formed.
2. Elastin is the main protein component, from which the elastic fibers consist of. Like collagen, elastin contains a lot of glycine and proline. Elastin contains oxyproline in about 10 times less than collagen; there is no hydroxylysine, a lot of valine and other hydrophobic amino acids.
Elastin peptide chain is in the form of loose globule. In the intercellular matrix elastin molecules are linked by crosslinks, in the formation of which lysine residues are involved. As a result elastinic fibers and layers are formed. Elastin, unlike other fibrous proteins can be stretched in two directions.
Elastin is synthesized by fibroblasts. Its predecessor is tropoelastin. It does not contain cross-linking bonds, and it is soluble. Then tropoelastin turns into a mature insoluble elastin, which contains a large number of cross-links. It is contained in large blood vessels, ligaments, lungs.
3. Non-collagenic structural glycoproteins.
Fibronectin is a dimer. Its subunits are joined anti-parallel by two disulfide bonds in the area of C-terminal ends. The peptide chain forms several globular domains. The molecules have an elongated shape and have binding sites with other molecules of fibronectin, with collagen, glycosaminoglycans, integrins.
Laminin is heterotrimer. Laminin molecule has a cruciform shape, with three short branches, each of which contains globular domains, and a long branch with a C-terminal globular domain. Laminin in basal membranes is in a complex with another protein – nidogene. Nidogen has binding sites of collagen. It provides the integration main components of the basement membrane. In the presence of Ca2 + laminin by self-assembly forms tela due to the interaction of the globular domain of short branches.
4. Proteoglycans are high-molecular carbohydrate-protein compounds. They are up to 30% of the dry mass of connective tissue.
Polysaccharide group of proteoglycans called mucopolysaccharides (these substances are found mainly in the mucous substrates). Later they became known as glycosaminoglycans. These are linear unbranched polymers built of repeating disaccharide units. They are composed of glucosamine or galactosamine residues, as well as D-glucuronic or L-iduronic acid residues.
First hyaluronic acid was detected in the vitreous body.
It is built from the residues of glucuronic acid and N-acetylglucosamine. It is contained in the heart valves, cartilage. Its main function is the binding of water. It is involved in regulation of tissue permeability.
Chondroitin sulphates containe glucuronic acid and sulphuretted N-acetylgalactosamine. Chondroitin-6-sulphate is contained in the heart valves, and chondroitin-4-sulfate is contained in the cartilage.
Dermatan sulphate is found in the dermis (skin). L-iduronic acid is in the composition of dermatan sulphate. It is involved in the stabilization of collagen bundles.
Keratan sulphate was first isolated from bovine cornea. It does not contain D-glucuronic or L-iduronic acids. Keratan sulphates from different tissues have varying degrees of sulphonation and the type of connection to the protein.
Heparin is synthesized by mast cells. It exists in the form of single polysaccharide chains, or in the form of proteoglycans. Heparin is anticoagulant, it is involved in the regulation of blood clotting.
The biosynthesis of glycosaminoglycans.
Glucosamine and glucuronic acid are synthesized from D-glucose. Further there is epimerization of glucosamine into galactosamine, and glucuronic acid – into iduronic acid. Predecessors of hyaluronic acid are uridinediphosphonucleotide derivatives of N-acetylglucosamine and glucuronic acid.
The protein part of proteoglycans is synthesized on polyribosomes of ER. Synthesis of carbohydrate part begins in the cavity of the ER. Here is its sulphonation. Simultaneously with the synthesis of polysaccharide chains proteoglycan molecule moves in the direction of lamellar complex, where it is included in the secretory granules and subjected exocytosis.
Different proteoglycans have different protein components; they have nothing in common with collagen and elastin. A large number of glycosaminoglycan chains are connected through the hydroxyl group of serine with one peptide chain, so that the molecule resembles a brush. In the intercellular substance proteoglycans are contained mainly in the complexes with hyaluronic acid.
Proteoglycan molecules are "fluff" in a solution because of the repulsion of negatively charged sulphonated glycosaminoglycan chains and also due to hydration. It is important for cartilage of joint surfaces, where proteoglycans act as springs.
Integration of the extracellular matrix and cells is provided by adhesion molecules.
Integrins are transmembrane proteins; they are dimers. They provide a transmembrane signal transduction. Both integrin chains have large extracellular and short intracellular domains. When in the matrix changes occur in the extracellular domain of the integrin, the signal is transmitted to the intracellular domain and regulatory cytoplasmic proteins are associated with it. Signaling by integrins from outside to inside leads to a change in the synthesis and secretion of extracellular matrix components or synthesis and secretion of enzymes that destroy the components of the matrix. Similarly, the signal transmission occurs from the inside out.
