- •Биологическая химия
- •060101 – Лечебное дело
- •Часть II
- •Contents
- •Cholesterol
- •I. Theoretical part
- •1. Lipids metabolism
- •1.1. Classification of lipids
- •2. Glycolipids (basically glycosphingolipids).
- •Galactosyl ceramide
- •1.2. Digestion and absorption of fats
- •Lipolysis of triglycerides in adipose tissue
- •1.3. Fatty acids oxidation
- •2. Transport of fa inside mitochondrion.
- •3 Ketocyl CoA tyolase Palmitic acid preformed rest Palmityl-CoA Acetyl-CoA
- •Oxidation of unsaturated fatty acids
- •Violations of fatty acids oxidation
- •Acetyl-CoA metabolism
- •1.4. Lipogenesis
- •Regulation of fatty acids synthesis and break down
- •1.5. Metabolism of phospholipids
- •1.6. Essencial fatty acids. Eicosanoids
- •1.7. Cholesterol metabolism
- •Distribution and functions of cholesterol
- •Cholesterol biosynthesis
- •1. Conversion of active acetate into mevalonic acid.
- •2. Squalene formation from mevalonic acid.
- •Regulation of cholesterol synthesis
- •Cholesterol esters metabolism
- •Synthesis of bile acids
- •1.8. Regulation of lipid metabolism
- •1.9. Violations of lipid metabolism
- •Violation of fats adsorption processes:
- •Test questions
- •2. Proteins metabolism
- •2.1. Pathways of proteins degradation
- •2. Digestion of proteins.
- •The selectivity of peptidases
- •2.2. Amino acids metabolism
- •The reactions of amino groups
- •Intramolecular deamination.
- •Reactions of the carboxyl group
- •2. Aminoacyladenylate formation.
- •2.3. Ammonia neutralization in the body
- •Storage and transport of ammonia
- •Fumarate pyruvate aspartate
- •2.4. Violations of nitrogen metabolism
- •2.5. Metabolism of individual amino acids
- •2. Metabolism of sulfur amino acids.
- •3. Metabolism of branched chain amino acids.
- •Leu, Ile, Val α-keto acids acyl-CoA derivatives
- •4. Metabolism of dicarboxylic amino acids
- •5. Metabolism of diaminomonocarboxylic acids.
- •6. Metabolism of phenylalanine and tyrosine.
- •7. Metabolism of tryptophan.
- •2.6. Metabolism of conjugated proteins. Chromoproteins metabolism
- •The degradation of hemoglobin in the tissues (the formation of bile pigments)
- •The hemoglobin biosynthesis
- •2.7. Nucleoproteins metabolism
- •Adenine hypoxanthine; guanine xanthine
- •The synthesis of pyrimidine nucleotides u, c, t
- •I nosine-5'-phosphate Xantosine-5'-phosphate
- •The synthesis of deoxyribonucleotides
- •Test questions
- •3. Template biosynthesis
- •3.1. Biosynthesis of nucleic acids
- •3.1.1. Dna biosynthesis (replication)
- •Synthesis of dna in the rna template
- •3.1.2. Rna biosynthesis
- •Rna synthesis in rna template
- •3.2. Protein biosynthesis
- •The properties of the genetic code
- •Preparatory stage of protein synthesis
- •3.2.1. Translation
- •1. Initiation.
- •2. Elongation.
- •3.2.2. Post-translational modification of proteins
- •Transport of synthesized proteins through membranes
- •3.2.3. Regulation of protein biosynthesis
- •3.3. Genetic engineering
- •Test questions
- •4. Hormones, nomenclature, classification
- •Test questions
- •5. Metabolic processes interaction
- •In the organism
- •Protein and carbohydrate metabolisms interconnection
- •Protein and lipid metabolisms interconnection
- •Carbohydrate and lipid metabolisms interconnection
- •Levels of homeostasis regulation
- •Changes in metabolism during starvation
- •Test questions
- •6. Mineral and water and salt metabolism
- •6.1. Water in the human body
- •6.2. Salt metabolism
- •7. Renal biochemistry. The role of the kidneys in the regulation of water and salt metabolism
- •7.1. Excretory function of the kidneys
- •7.2. Homeostatic function of the kidneys
- •7.3. Metabolic functions of the kidneys
- •7.4. Regulation of water and salt metabolism and uropoiesis
- •Test Questions
- •8. Biochemistry of nervous tissue
- •8.1. Features of metabolism of nervous tissue
- •8.2. Mechanism of nerve impulses conduction
- •Cholinergic synapses
- •Test Questions
- •9. Biochemistry of muscle tissue
- •9.1. Chemical composition of muscle tissue
- •Sources of energy for muscle work
- •9.2. Mechanism of muscle contraction and its regulation
- •9.3. Biochemical changes in muscles within pathology
- •Test Questions
- •10. Biochemistry of extracellular matrix
- •10.1. Structure of extracellular matrix
- •Collagens.
- •Fibril-forming collagens
- •Collagen, forming a tela
- •10.2. Features of metabolism of extracellular matrix Catabolism of extracellular matrix proteins
- •Reparation of damage of the extracellular matrix in norm
- •Biochemical changes of connective tissue with aging
- •The lesions of connective tissue
- •11. Blood biochemistry
- •11.1. Respiratory function of blood. Buffer systems of blood
- •11.2. Blood coagulation system. Changes in pathology
- •Extrinsic and intrinsic pathways of blood clotting
- •Test Questions
- •12. Liver biochemistry
- •12.1. Main functions of the liver
- •The role of the liver in the metabolism of carbohydrates
- •The role of liver in lipid metabolism
- •The role of the liver in the metabolism of proteins and amino acids
- •12.2. Choleresis. Pigment metabolism. Types of jaundice
- •The cleavage of hemoglobin: hemoglobinverdoglobinbiliverdinbilirubin.
- •12.3. Detoxifying liver function
- •Test Questions
- •13. Regulation of calcium and phosphorus metabolism
- •14. Bone biochemistry
- •Test Questions
- •II. Laboratory workshop Laboratory work 1. Lipid metabolism
- •Hydrolysis of milk fat by lipase
- •Test Questions
- •Laboratory work 2. Phospholipids. Cholesterol
- •4.1. Schiff reaction.
- •4.2. Salkowski reaction.
- •4.3. Lieberman-Burchard reaction.
- •Preparation of solutions of cholesterol for the calibration curve
- •Test Questions
- •Laboratory work 3. Digestion of proteins. Determination of acids of gastric contents
- •Experiment 2. Qualitative determination of free hydrochloric acid in gastric juice using indicator congo red.
- •Results of the determination of gastric acidity
- •Test Questions
- •Laboratory work 4. The end products of nitrogen metabolism
- •Test Questions
- •Laboratory work 5. Hormones
- •2.1. Biuretic reaction.
- •2.2. Millon’s reaction.
- •2.4. Geller’s test.
- •3. Qualitative reaction to thyroxine.
- •4. Qualitative reactions to the 11-dehydro-17-oxykortikosteron (cortisone).
- •4.1. The reaction with phenylhydrazine sulfate.
- •4.2. The reaction with Fehling's reagent.
- •Test Questions
- •Laboratory work 6. Mineral and water and salt metabolism
- •1.1. Determination the pH of saliva.
- •1.2. Detection of phosphates in saliva.
- •2.1. Qualitative detection of chlorides in the urine.
- •2.2. Detection of calcium in the urine.
- •2.3. Detection of phosphates in the urine.
- •The composition of mixtures for the calibration curve
- •Test Questions
- •Laboratory work 7. Urine biochemistry
- •3.1. Qualitative detection and quantitative determination of protein in the urine.
- •3.1.1. The test by boiling in weak acid environment.
- •3.1.2. The test by boiling in an acid medium in the presence of saturated sodium chloride solution.
- •3.1.3. Geller’s test.
- •3.1.4. The test with sulfosalicylic acid.
- •3.1.5. Quantitative determination of protein in the urine by the method of dilution (Brandberg - Roberts - Stolnikov method).
- •Determination of protein in the urine using dilution method
- •3.2. Semi-quantitative method for determining glucose and ketone bodies in urine using test strips.
- •3.3. Detection of blood pigments in the urine by boiling with alkali (Geller’s test).
- •Test Questions
- •Laboratory 8. Blood biochemistry
- •1. Buffer properties of blood serum.
- •2. Quantitative determination of total protein in serum according to biuretic reaction.
- •The composition of mixtures for the ployying of the calibration curve
- •3. Determination of calcium in serum by the method of de Waard.
- •Test Questions
- •Laboratory work 9. Detection of bile pigments in urine
- •Test Questions
- •Laboratory work 10. Biochemistry of bone and connective tissue
- •1. Preparation of extracts of bone and teeth tissues.
- •Test Questions
- •Bibliography
- •Biochemistry
- •In Two Parts Part II
- •392008, Г. Тамбов, ул. Советская, 190г
10.2. Features of metabolism of extracellular matrix Catabolism of extracellular matrix proteins
In the catabolism of extracellular matrix proteins metalloproteinase plays a major role. It is Ca-dependent, zinc-binding endopeptidase. Regulators of their activity are the tissue inhibitors of metalloproteinases, and cytokines.
Collagens are slowly metabolized proteins: their half-life time is measured in weeks or months. Half-life time of elastin in the tissues of humans is about 75 years.
Collagenase cuts all three peptide chains of collagen between glycine and leucine residues. The resulting fragments are denatured and hydrolyzed by different peptide hydrolases. The content of hydroxyproline in the blood and urine reflects the balance of the rate of collagen and hydroxyproline catabolism. During some diseases associated with the damage of connective tissue, such as hyperparatyroidism excretion of hydroxyproline is increased due to accelerated breakdown of collagen.
Proteoglycans metabolize at high rate. Half-life time of extracellular proteoglycans matrix is days or weeks, of the cell surface – are hours. Proteoglycans are destroyed in lysosomes.
Cortisone and its analogs inhibit the biosynthesis of collagen by fibroblasts, inhibit the biosynthesis of glycosaminoglycans. They activate the enzymatic catabolism of collagen. Aldosterone and deoxycorticosterone increase the biosynthesis of inoglia. Thyroxine causes depolymerization of hyaluronic acid, and somatotropic hormone of anterior pituitary stimulates inclusion of proline into a polypeptide chain of tropocollagen.
Reparation of damage of the extracellular matrix in norm
In the matrix, there may be isolated focuses of damage (e.g., accidental proteolysis). Metalloproteinases are activated in the area of violations. There is a degradation of damaged and improperly oriented molecules. The basement membrane serves as a template for the assembly of new membrane, which replaces the damaged.
In wound healing a number of cytokines is involved, but the special role is belongs to transforming growth factor (TGF). TGF induces the synthesis of collagen, fibronectin, laminin, glycosaminoglycans and inhibits their degradation. TGF stimulates the synthesis of integrins that regulate the formation of extracellular matrix components.
Biochemical changes of connective tissue with aging
With aging there is a decrease of water content and the ratio of the main substance / fiber due to increase of collagen content and decreased concentration of glycosaminoglycans, particularly hyaluronic acid. A number of cross-links in collagen is increased, its elasticity is decreased (the process of "maturation" of fibrillar structures of connective tissue). This is the normal outcome of metabolic processes occurring in the body.
The lesions of connective tissue
Scurvy is a disease caused by an acute lack of vitamin C. This leads to disruption of collagen synthesis, the connective tissue loses its strength. Symptoms are weakness, fatigue, weakening of muscle tone, rheumatic pain, loosening and loss of teeth; the fragility of the blood vessels leads to bleeding gums, bleeding in the skin. Treatment and prevention is normal providing of the body with vitamin C.
Collagenoses (connective tissue disease) are rheumatism, rheumatoid arthritis, systemic lupus erythematosus, systemic scleroderma, dermatomyositis. There is damage of all the structural components of connective tissue. All collagenoses are characterized by multiple organ lesions, vasculitis (inflammation and necrosis of the vascular wall), arthritis and immunity disorders.
The greatest recognition has the theory of infectious-allergic origin, in particular – the concept of autoimmune origin.
Corticosteroid hormones and a variety of immunosuppressive drugs have the therapeutic effect.
Fibrosis is an abnormal growth of fibrous component of connective tissue, excessive accumulation of extracellular matrix with the appearance of scars of various organs. It is preceded by a sufficiently long phase of inflammatory disease, usually related to chronic action of damaging factors (ethanol in cirrhosis of the liver, inhalation of dust from pulmonary fibrosis, hyperglycemia in diabetic nephropathy, etc.).
Mucopolysaccharidosis (MPS) is a group of hereditary diseases of connective tissue due to metabolic disorders of glycosaminoglycans as a result of genetically determined deficiency of enzymes involved in their cleavage. Glycosaminoglycans are accumulated in large amounts in organs and tissues.
The main manifestations of MPS are the systemic failure of the skeleton, delayed physical development. The nervous system, eyes and internal organs are affected. There is a severe disturbance of child development and reducing life expectancy.
For the treatment hormones are prescribed: ACTH (adrenocorticotropic hormone) to inhibit the synthesis of mucopolysaccharides, thyreoidinum, prednisolone. Large doses of vitamin A and cardiac medications are used; there are attempts to treat with cytostatic agents.
More than 400 mutations of collagen are known; they are related to chondrodysplasia, some forms of osteoporosis and osteoarthritis.
Osteogenesis imperfecta is a rare disorder of connective and supporting tissue. The basis of the disease is mutations in one of two genes encoding collagen type I. The disease is characterized by abnormal fragility of the bones. In severe lesions multiple fractures occur already in utero, including fractures of the ribs. Many patients suffer from a shortened, deformed limbs, and fragile bell or barrel-shaped chest. In mild cases, there are some broken limbs, but often there are compression fractures of the spinal column.
Test Questions
1. List the functions of the extracellular matrix.
2. Describe the structure and biological role of main proteins of the extracellular matrix.
3. What enzymes play a major role in the catabolism of extracellular matrix proteins?
4. Explain the reasons for increased bleeding with a deficiency of vitamin C.
5. What compounds are called glycosaminoglycans? Give examples.
6. What role do proteoglycans in the cartilage of the articular surfaces?
7. Describe the biochemical changes of connective tissue with aging.
