- •Биологическая химия
- •060101 – Лечебное дело
- •Часть II
- •Contents
- •Cholesterol
- •I. Theoretical part
- •1. Lipids metabolism
- •1.1. Classification of lipids
- •2. Glycolipids (basically glycosphingolipids).
- •Galactosyl ceramide
- •1.2. Digestion and absorption of fats
- •Lipolysis of triglycerides in adipose tissue
- •1.3. Fatty acids oxidation
- •2. Transport of fa inside mitochondrion.
- •3 Ketocyl CoA tyolase Palmitic acid preformed rest Palmityl-CoA Acetyl-CoA
- •Oxidation of unsaturated fatty acids
- •Violations of fatty acids oxidation
- •Acetyl-CoA metabolism
- •1.4. Lipogenesis
- •Regulation of fatty acids synthesis and break down
- •1.5. Metabolism of phospholipids
- •1.6. Essencial fatty acids. Eicosanoids
- •1.7. Cholesterol metabolism
- •Distribution and functions of cholesterol
- •Cholesterol biosynthesis
- •1. Conversion of active acetate into mevalonic acid.
- •2. Squalene formation from mevalonic acid.
- •Regulation of cholesterol synthesis
- •Cholesterol esters metabolism
- •Synthesis of bile acids
- •1.8. Regulation of lipid metabolism
- •1.9. Violations of lipid metabolism
- •Violation of fats adsorption processes:
- •Test questions
- •2. Proteins metabolism
- •2.1. Pathways of proteins degradation
- •2. Digestion of proteins.
- •The selectivity of peptidases
- •2.2. Amino acids metabolism
- •The reactions of amino groups
- •Intramolecular deamination.
- •Reactions of the carboxyl group
- •2. Aminoacyladenylate formation.
- •2.3. Ammonia neutralization in the body
- •Storage and transport of ammonia
- •Fumarate pyruvate aspartate
- •2.4. Violations of nitrogen metabolism
- •2.5. Metabolism of individual amino acids
- •2. Metabolism of sulfur amino acids.
- •3. Metabolism of branched chain amino acids.
- •Leu, Ile, Val α-keto acids acyl-CoA derivatives
- •4. Metabolism of dicarboxylic amino acids
- •5. Metabolism of diaminomonocarboxylic acids.
- •6. Metabolism of phenylalanine and tyrosine.
- •7. Metabolism of tryptophan.
- •2.6. Metabolism of conjugated proteins. Chromoproteins metabolism
- •The degradation of hemoglobin in the tissues (the formation of bile pigments)
- •The hemoglobin biosynthesis
- •2.7. Nucleoproteins metabolism
- •Adenine hypoxanthine; guanine xanthine
- •The synthesis of pyrimidine nucleotides u, c, t
- •I nosine-5'-phosphate Xantosine-5'-phosphate
- •The synthesis of deoxyribonucleotides
- •Test questions
- •3. Template biosynthesis
- •3.1. Biosynthesis of nucleic acids
- •3.1.1. Dna biosynthesis (replication)
- •Synthesis of dna in the rna template
- •3.1.2. Rna biosynthesis
- •Rna synthesis in rna template
- •3.2. Protein biosynthesis
- •The properties of the genetic code
- •Preparatory stage of protein synthesis
- •3.2.1. Translation
- •1. Initiation.
- •2. Elongation.
- •3.2.2. Post-translational modification of proteins
- •Transport of synthesized proteins through membranes
- •3.2.3. Regulation of protein biosynthesis
- •3.3. Genetic engineering
- •Test questions
- •4. Hormones, nomenclature, classification
- •Test questions
- •5. Metabolic processes interaction
- •In the organism
- •Protein and carbohydrate metabolisms interconnection
- •Protein and lipid metabolisms interconnection
- •Carbohydrate and lipid metabolisms interconnection
- •Levels of homeostasis regulation
- •Changes in metabolism during starvation
- •Test questions
- •6. Mineral and water and salt metabolism
- •6.1. Water in the human body
- •6.2. Salt metabolism
- •7. Renal biochemistry. The role of the kidneys in the regulation of water and salt metabolism
- •7.1. Excretory function of the kidneys
- •7.2. Homeostatic function of the kidneys
- •7.3. Metabolic functions of the kidneys
- •7.4. Regulation of water and salt metabolism and uropoiesis
- •Test Questions
- •8. Biochemistry of nervous tissue
- •8.1. Features of metabolism of nervous tissue
- •8.2. Mechanism of nerve impulses conduction
- •Cholinergic synapses
- •Test Questions
- •9. Biochemistry of muscle tissue
- •9.1. Chemical composition of muscle tissue
- •Sources of energy for muscle work
- •9.2. Mechanism of muscle contraction and its regulation
- •9.3. Biochemical changes in muscles within pathology
- •Test Questions
- •10. Biochemistry of extracellular matrix
- •10.1. Structure of extracellular matrix
- •Collagens.
- •Fibril-forming collagens
- •Collagen, forming a tela
- •10.2. Features of metabolism of extracellular matrix Catabolism of extracellular matrix proteins
- •Reparation of damage of the extracellular matrix in norm
- •Biochemical changes of connective tissue with aging
- •The lesions of connective tissue
- •11. Blood biochemistry
- •11.1. Respiratory function of blood. Buffer systems of blood
- •11.2. Blood coagulation system. Changes in pathology
- •Extrinsic and intrinsic pathways of blood clotting
- •Test Questions
- •12. Liver biochemistry
- •12.1. Main functions of the liver
- •The role of the liver in the metabolism of carbohydrates
- •The role of liver in lipid metabolism
- •The role of the liver in the metabolism of proteins and amino acids
- •12.2. Choleresis. Pigment metabolism. Types of jaundice
- •The cleavage of hemoglobin: hemoglobinverdoglobinbiliverdinbilirubin.
- •12.3. Detoxifying liver function
- •Test Questions
- •13. Regulation of calcium and phosphorus metabolism
- •14. Bone biochemistry
- •Test Questions
- •II. Laboratory workshop Laboratory work 1. Lipid metabolism
- •Hydrolysis of milk fat by lipase
- •Test Questions
- •Laboratory work 2. Phospholipids. Cholesterol
- •4.1. Schiff reaction.
- •4.2. Salkowski reaction.
- •4.3. Lieberman-Burchard reaction.
- •Preparation of solutions of cholesterol for the calibration curve
- •Test Questions
- •Laboratory work 3. Digestion of proteins. Determination of acids of gastric contents
- •Experiment 2. Qualitative determination of free hydrochloric acid in gastric juice using indicator congo red.
- •Results of the determination of gastric acidity
- •Test Questions
- •Laboratory work 4. The end products of nitrogen metabolism
- •Test Questions
- •Laboratory work 5. Hormones
- •2.1. Biuretic reaction.
- •2.2. Millon’s reaction.
- •2.4. Geller’s test.
- •3. Qualitative reaction to thyroxine.
- •4. Qualitative reactions to the 11-dehydro-17-oxykortikosteron (cortisone).
- •4.1. The reaction with phenylhydrazine sulfate.
- •4.2. The reaction with Fehling's reagent.
- •Test Questions
- •Laboratory work 6. Mineral and water and salt metabolism
- •1.1. Determination the pH of saliva.
- •1.2. Detection of phosphates in saliva.
- •2.1. Qualitative detection of chlorides in the urine.
- •2.2. Detection of calcium in the urine.
- •2.3. Detection of phosphates in the urine.
- •The composition of mixtures for the calibration curve
- •Test Questions
- •Laboratory work 7. Urine biochemistry
- •3.1. Qualitative detection and quantitative determination of protein in the urine.
- •3.1.1. The test by boiling in weak acid environment.
- •3.1.2. The test by boiling in an acid medium in the presence of saturated sodium chloride solution.
- •3.1.3. Geller’s test.
- •3.1.4. The test with sulfosalicylic acid.
- •3.1.5. Quantitative determination of protein in the urine by the method of dilution (Brandberg - Roberts - Stolnikov method).
- •Determination of protein in the urine using dilution method
- •3.2. Semi-quantitative method for determining glucose and ketone bodies in urine using test strips.
- •3.3. Detection of blood pigments in the urine by boiling with alkali (Geller’s test).
- •Test Questions
- •Laboratory 8. Blood biochemistry
- •1. Buffer properties of blood serum.
- •2. Quantitative determination of total protein in serum according to biuretic reaction.
- •The composition of mixtures for the ployying of the calibration curve
- •3. Determination of calcium in serum by the method of de Waard.
- •Test Questions
- •Laboratory work 9. Detection of bile pigments in urine
- •Test Questions
- •Laboratory work 10. Biochemistry of bone and connective tissue
- •1. Preparation of extracts of bone and teeth tissues.
- •Test Questions
- •Bibliography
- •Biochemistry
- •In Two Parts Part II
- •392008, Г. Тамбов, ул. Советская, 190г
Extrinsic and intrinsic pathways of blood clotting
The extrinsic pathway of blood coagulation involves thromboplastin (tissue factor, factor III), proconvertin (factor VII), Stuart factor (Factor X), proaccelerin (factor V), as well as Ca2+ and phospholipids of membrane surfaces on which a thrombus is formed. Homogenates of many tissues accelerate blood clotting: this action is called thromboplastin activity. It is probably due to the presence in the tissues of some special protein. Factors VII and X are proenzymes. They are activated by partial proteolysis, turning to proteolytic enzymes – factors VIIa and Xa, respectively. Factor V is a protein that is under the influence of thrombin is converted to factor V', which is not an enzyme but activates the enzyme Xa according to the allosteric mechanism; activation is enhanced in the presence of phospholipids and Ca2+.
The blood plasma permanently contains trace amounts of factor VIIa. When there is tissue and the vessel walls damage factor III is released. It is a powerful activator of factor VIIa; activity the latter one is increased by more than 15,000 times. Factor VIIa cleaves the part of peptide chain of factor X, transforming it into an enzyme – factor Xa. Similarly Xa activates prothrombin; formed thrombin catalyzes the conversion of fibrinogen into fibrin, as well as the conversion of transglutaminase precursor into active enzyme (factor XIIIa). This cascade of reactions has positive feedbacks that enhance the end result. Factor Xa and thrombin catalyze the conversion of inactive factor VII in enzyme VIIa; thrombin converts factor V to factor V', which, together with phospholipids and Ca2+ in the 104-105 times increases the activity of factor Xa. Due to positive feedbacks the rate of formation of thrombin and, consequently, the transformation of fibrinogen into fibrin grow like an avalanche, and within 10-12 seconds blood is cloted.
Blood clotting according to the intrinsic mechanism is much slower and requires 10-15 minutes. This mechanism is called intrinsic because it does not require thromboplastin (tissue factor) and all relevant factors are contained in the blood. The intrinsic mechanism of coagulation is a cascade of successive activations of proenzymes. From the stage of conversion of factor X to Xa, the extrinsic and intrinsic pathways are identical. The intrinsic pathway of coagulation, as the extrinsic one, has positive feedbacks: thrombin catalyzes the conversion of precursor V and VIII into activators V 'and VIII', which ultimately increases the rate of formation of the thrombin.
External and internal mechanisms of blood coagulation interact to each other. Factor VII is specific to the extrinsic pathway of coagulation. It can be activated by factor XIIa, which is involved in the intrinsic pathway. This turns both pathways in a single system of blood clotting.
Hemophilias. Hereditary defects in proteins involved in blood coagulation, are manifested by increased bleeding. The most common disease is caused by a lack of Factor VIII. It is Hemophilia A. Factor VIII gene is localized in the X-chromosome; the gene damage is manifested as a recessive trait, so the women have not got hemophilia A. Men who have one X-chromosome inheritance of a defective gene causes hemophilia. Symptoms of the disease are usually detected at an early age: at the slightest cuts, or even spontaneously bleeding bleedings arise; it is characterized by intra-articular hemorrhage. Frequent blood loss leads to iron deficiency anemia. Fresh donor blood containing factor VIII, or preparations of factor VIII is injected to stop bleeding when there is hemophilia.
Hemophilia B. Hemophilia B is caused by mutations in the gene of factor IX, which, like the gene of factor VIII, is localized in the sex chromosome; mutations are recessive, therefore, hemophilia B is found only in men. Hemophilia B occurs in about 5 times less frequent than hemophilia A. Hemophilia B is treated with the introduction of drugs factor IX.
When there is increased blood clotting intravascular clots, plugging the intact vessels (thrombotic states, thrombophilia) may occur.
Fibrinolysis. Thrombus is dissipated within a few days after the formation. The main role of its dissolution belongs to proteolytic enzyme plasmin. Plasmin hydrolyzes peptide bonds in fibrin, formed by residues of arginine and tryptophan, with the formation of soluble peptides. The precursor of plasmin – plasminogen – is in the circulating blood. It is activated by the enzyme urokinase, which is found in many tissues. Plasminogen can be activated by kallikrein, which is also in the thrombus. Plasmin can be activated in the circulating blood without damaging the blood vessels. There plasmin is rapidly inactivated by protein inhibitor α2-antiplasmin, while inside the clot it is protected from the action of the inhibitor. Urokinase is an effective agent for dissolving blood clots, or preventing their formation during thrombophlebitis, pulmonary vascular thrombosis, myocardial infarction, surgical intervention.
Anticoagulant system. During the development of the blood coagulation system in the course of evolution two opposite problems were solved: prevention the leakage of blood in damaged vessels and keeping the blood in the liquid state when in intact vessels. The second problem is solved by anticoagulation system, which is represented by a set of plasma proteins that inhibit proteolytic enzymes.
Plasma protein antithrombin III inhibits all proteases involved in blood clotting, except factor VIIa. It does not act on factors that are in the complexes with phospholipids, but only to those which are in the plasma in a dissolved state. Therefore, it is necessary not for the regulation of clot formation, but to eliminate the enzymes which enter the blood stream from the site of clot formation, thus it prevents the spread of blood clotting in uninjured areas of the bloodstream.
As a drug that prevents blood clotting, heparin is used. Heparin enhances the inhibitory effect of antithrombin III: joining heparin induces conformational changes that increase the affinity of the inhibitor to thrombin and other factors. After connecting this complex with thrombin heparin is released and can be attached to other molecules of antithrombin III. Thus, each molecule of heparin may activate a large number of molecules of antithrombin III; in this respect the action of heparin is similar to the action of catalysts. Heparin is used as an anticoagulant in the treatment of thrombotic conditions. Genetic defect is known when the antithrombin III concentration in the blood is half the normal; such people often have thrombosis. Antithrombin III is the main component of anticoagulation system.
In blood plasma there are other proteins – protease inhibitors, which can also reduce the probability of intravascular coagulation. Such a protein is α2-macroglobulin, which inhibits many proteases, and not only those involved in blood clotting. α2-macroglobulin contains sites of the peptide chain that are substrates of many proteinases; proteinases attach to these sites and hydrolyze in them some peptide bonds, as a result the conformation of α2-macroglobulin is changed, and it captures the enzyme, like a trap. The enzyme is not damaged: in the complex with an inhibitor it is able to hydrolyze low molecular weight peptides, but for large molecules the active site of the enzyme is not available. α2-macroglobulin complex with the enzyme is rapidly removed from the blood: time of its half-life in blood is about 10 minutes. During a massive entry into the bloodstream of activated clotting factors the power of anticoagulation system can be inadequate, and there is a risk of thrombosis.
Vitamin K. The peptide chains of factors II, VII, IX, and X contain an unusual amino acid – γ-carboxyglutamic. This amino acid is formed from glutamic acid as a result of the posttranslational modification of proteins:
Reactions, which involve factors II, VII, IX, and X, are activated by Са2+ ions and phospholipids: radicals of γ-carboxyglutamic acids form binding sites of Са2+ in these proteins. These factors, and factors V 'and VIII' are attached to the bilayer phospholipid membranes and to each other, with the participation of Са2+ ions; and there is the activation of factors II, VII, IX, and X in such complexes. Са2+ ion activates also some other reactions of coagulation. The decalcified blood does not clot.
The conversion of the glutamic residue into the residue of γ-carboxyglutamic acid is catalyzed by an enzyme, a coenzyme of which is vitamin K. Vitamin K deficiency appears to bleeding disorders, subcutaneous and internal hemorrhages. In the absence of vitamin K factors II, VII, IX, and X are formed; they do not contain γ-carboxyglutamic residues. These proenzymes cannot be converted into active enzymes.
